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SRX10601273: GSM5241322: iMSBmal1-/- - 2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 45.6M spots, 9.2G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: The Skeletal Muscle Molecular Clock Regulates Sarcomere Length Through Titin Splicing [1]
show Abstracthide Abstract
Circadian rhythms have been implicated in regulating skeletal muscle structure and function, but no mechanisms have connected the molecular clock to sarcomeric proteins. We identified an isoform shift in the sarcomeric ruler, titin, and showed that the skeletal muscle molecular clock regulates titin isoform and subsequently sarcomere length through RBM20, an RNA binding protein that controls titin splicing. Overall design: Tibialis anterior muscles were collected from inducible, skeletal muscle specific Bmal1 fl/fl mice 5 weeks after reatment with either vehicle or tamoxifen solution. Muscles were pulverized under liquid nitrogen to prevent fiber type bias prior to total RNA colleciton.
Sample: iMSBmal1-/- - 2
SAMN18741515 • SRS8702682 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Tibialis anterior muscles were isolated and flash frozen in liquid nitrogen. Muscles were pulverized under liquid nitrogen to prevent fiber type sampling bias then homogenized in Trizol before RNA was extracted with a Qiagen RNeasy kit using the standard protocol. RNA was treated with TURBO DNase (Ambion) to remove genomic DNA. Libraries were prepared using KAPA Stranded RNAseq Kits with RiboErase according to standard protocols.
Experiment attributes:
GEO Accession: GSM5241322
Links:
Runs: 1 run, 45.6M spots, 9.2G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR1423839345,627,2439.2G3.2Gb2022-11-10

ID:
14078277

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