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SRX10600447: GSM5240804: exp031020 RBD rep 6; Komagataella phaffii; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 72.2M bases, 36.7Mb downloads

Submitted by: NCBI (GEO)
Study: Engineered SARS-CoV-2 receptor binding domain improves manufacturability in yeast and immunogenicity in mice
show Abstracthide Abstract
Global containment of COVID-19 still requires accessible and affordable vaccines for low- and middle-income countries (LMICs). Recently approved vaccines provide needed interventions, albeit at prices that may limit their global access. Subunit vaccines based on recombinant proteins are suited for large-volume microbial manufacturing to yield billions of doses annually, minimizing their manufacturing cost. These types of vaccines are well-established, proven interventions with multiple safe and efficacious commercial examples. Many vaccine candidates of this type for SARS-CoV-2 rely on sequences containing the receptor-binding domain (RBD), which mediates viral entry to cells via ACE2. Here we report an engineered sequence variant of RBD that exhibits high-yield manufacturability, high-affinity binding to ACE2, and enhanced immunogenicity after a single dose in mice compared to the Wuhan-Hu-1 variant used in current vaccines. Antibodies raised against the engineered protein exhibited heterotypic binding to the RBD from two recently reported SARS-CoV-2 variants of concern (501Y.V1/V2). Presentation of the engineered RBD on a designed virus-like particle (VLP) also reduced weight loss in hamsters upon viral challenge. Overall design: Two gene expression analysis experiments where various numbers of replicates of yeast cells expressing SARS-Cov2 receptor binding domain (RBD) transgenes were compared to cells expressing the P8 control transgene. The exp020821 experiment compares wild type or engineered RBD to controls. The exp031020 compares wild type RBD to controls.
Sample: exp031020 RBD rep 6
SAMN18740785 • SRS8701856 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted and purified according to the Qiagen RNeasy kit (cat #74104) and RNA quality was analyzed to ensure RNA Quality Number >6.5. 3'DGE Nextera
Experiment attributes:
GEO Accession: GSM5240804
Links:
Runs: 1 run, 1M spots, 72.2M bases, 36.7Mb
Run# of Spots# of BasesSizePublished
SRR142375611,002,46972.2M36.7Mb2021-09-10

ID:
14077347

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