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SRX10343396: GSM5172630: 15_5; Nematostella vectensis; RNA-Seq
2 ILLUMINA (Illumina HiSeq 4000) runs: 39.5M spots, 8.5G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: Microbiome mediated plasticity promotes thermal adaptation in Nematostella vectensis
show Abstracthide Abstract
We wanted to infer the contribution of host vs symbiotic microbiota plasticities on thermal acclimation of the holobiont. We long-term acclimated anymals of the same clonal line to 3 different temperatures (15, 20 and 25°C) and monitored along time the changes in fitness, microbiota composition, and host transcriptome. Overall design: we submitted 15 samples of acclimated female polyps representing 5 replicates from each treatment temperature (15, 20, 25°C).
Sample: 15_5
SAMN18313933 • SRS8462603 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA and DNA extraction protocol from Qiagen "AllPrep DNA/RNA/miRNA Universal Kit" TruSeq stranded mRNA (incl. p-A enrichment)
Experiment attributes:
GEO Accession: GSM5172630
Links:
Runs: 2 runs, 39.5M spots, 8.5G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR1396546622,700,9113.5G1.3Gb2022-02-15
SRR1396546716,800,8605.1G1.9Gb2022-02-15

ID:
13532366

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