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SRX1023190: GSM1680126: Amphioxus_15hpf (12); Branchiostoma lanceolatum; OTHER
1 ILLUMINA (Illumina HiSeq 2000) run: 625,327 spots, 20.6M bases, 17Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies
PRJNA283542 • SRP058187 • All experiments • All runs
show Abstracthide Abstract
Comparison among vertebrates and the cephalochordate amphioxus Hox clusters architectures Overall design: 4C-seq experiments from promoters spanning the amphioxus Hox cluster and the zebrafish hoxd cluster and surrounnding areas,
Sample: Amphioxus_15hpf (12)
SAMN03652071 • SRS932948 • All experiments • All runs
Organism: Branchiostoma lanceolatum
Library:
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: Chromatin was extracted from single cells preparations from different samples. DNA was digested with DpnII and ligated. Then sample was de-crosslinked, digested with Csp6I and ligated again. Primers with Illumina adaptors were used to amplify the library. Different samples were multiplexed for sequencing.
Experiment attributes:
GEO Accession: GSM1680126
Links:
External link:
Runs: 1 run, 625,327 spots, 20.6M bases, 17Mb
Run# of Spots# of BasesSizePublished
SRR2016050625,32720.6M17Mb2015-12-16

ID:
1484049

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