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SRX1022750: GSM1679453: Mfa009-2; Macaca fascicularis; RNA-Seq
2 ION_TORRENT (Ion Torrent Proton) runs: 28.2M spots, 3.6G bases, 2.7Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Brain-specific transcriptome analysis in MECP2 transgenic monkeys
show Abstracthide Abstract
We have performed gene expression profiling of the MECP2 transgenic monkey, taking advantage of recently completed genome sequencing for the cynomolgus monkey. We found interesting changes in the pattern of alternative splicing of many genes, including genes coding synaptic proteins (e.g., neurexin-3 and Shank-3) and metabolism-related proteins, as compared to the wild-type monkey. This study provides important information for understanding the impact of disease-related gene on brain development. Overall design: Examination of transcriptome in brain tissues of wild-type and MECP2 transgenic monkeys.
Sample: Mfa009-2
SAMN03651358 • SRS932585 • All experiments • All runs
Library:
Instrument: Ion Torrent Proton
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from brain tissues of wild-type or MECP2 transgenic monkey by Trizol reagent (Invitrogen) separately. RNA library using standard Ion proton RNA-Seq Kit v2.0 protocol
Experiment attributes:
GEO Accession: GSM1679453
Links:
External link:
Runs: 2 runs, 28.2M spots, 3.6G bases, 2.7Gb
Run# of Spots# of BasesSizePublished
SRR201558020,904,7842.6G1.9Gb2015-11-25
SRR20155817,263,124971.4M735.3Mb2015-11-25

ID:
1483605

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