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SRX1022059: GSM1679000: TUBO, replicate #2; Mus musculus; miRNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 574,541 spots, 46M bases, 26.9Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Cell density, Her2 and progesterone signaling regulate dissemination of breast cancer cells [miRNA-Seq]
show Abstracthide Abstract
Disseminated breast cancer cells display genotypes disparate from the predominant clone of the primary tumor before manifestation of metastasis, suggesting that cancer cell dissemination occurs preferentially early; however, the underlying molecular mechanisms are unknown. Investigating metastasis in a Her2-driven mouse model, we found that the progesterone-induced paracrine cytokines Wnt4 and Rankl induced migration and early dissemination shortly after Her2 activation. Once tumorigenic growth was established, progesterone receptor (PgR) expression was lost and Wnt4/Rankl induced proliferation. The altered response from migration to proliferation was determined by cell density involving miRNA-regulated PgR expression and was reversible. Cells from early, low-density lesions displayed more functional stemness traits than cells from dense, advanced tumors, migrated more and founded significantly more metastases. The data suggest that many metastases are derived from early-disseminated cancer cells, implying that our concepts for systemic therapy need to be revised. Overall design: We analysed miRNA expression in the Her2 expressing cell lines as well as the secreting miRNA containing particles to find out PgR regulating miRNAs
Sample: TUBO, replicate #2
SAMN03649098 • SRS931982 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was isolated using TRIzol reagent (Life Technologies) following the manufacturer’s recommendations. In short, an adenylated adapter was ligated to the 3’ end of the total RNA by a truncated T4 RNA Ligase 2, followed by the ligation of a 5’ RNA-adapter by T4 RNA Ligase 1 (NEB). After reverse-transcription using a specific primer, the cDNA was amplified by PCR. After gel-fractionation bands corresponding to miRNA inserts were cut out. PCR products from these bands were eluted in elution buffer, precipitated and dissolved in water. The quality of the libraries was assessed by qPCR and Bioanalyzer measurements.
Experiment attributes:
GEO Accession: GSM1679000
Links:
External link:
Runs: 1 run, 574,541 spots, 46M bases, 26.9Mb
Run# of Spots# of BasesSizePublished
SRR2014744574,54146M26.9Mb2016-12-08

ID:
1481529

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