Chromatin accessibility assay of Fetal Muscle, Leg - SRA

SRX100979: Chromatin accessibility assay of Fetal Muscle, Leg
2 ILLUMINA (Illumina HiSeq 2000) runs: 38.5M spots, 1.4G bases, 855.1Mb downloads

Design: Single read - Illumina

Submitted by: Gene Expression Omnibus (GEO)

Study: University of Washington Human Reference Epigenome Mapping Project

Study of chromatin accessibility

Sample: Generic sample from Homo sapiens

Library:

Name: DS18471

Instrument: Illumina HiSeq 2000

Strategy: DNase-Hypersensitivity

Source: GENOMIC

Selection: DNase

Layout: SINGLE

Spot descriptor:

1 forward

EXPERIMENT_TYPE: Chromatin Accessibility

EXTRACTION_PROTOCOL: Qiagen minElut

DNASE_PROTOCOL: Stamlab DNase Protocol, Sabo, P. J. et al. Nat Met (show full text...)(hide...)

Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)

GEO Accession: GSM817183

Name	Step	Prev Step	Program	Version
BASE_CALLS	1	NIL	RTA	1.12.4.2
QUALITY_SCORES	2	1	RTA	1.12.4.2

Links:

External link: GEO Web Link

Runs: 2 runs, 38.5M spots, 1.4G bases, 855.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR352599	16,677,715	600.4M	326.9Mb	2011-10-14
SRR352600	21,777,635	784M	528.3Mb	2011-10-14

SRA