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SRX10011692: GSM5061375: iRBD13; Homo sapiens; miRNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 29.1M spots, 4.4G bases, 1.3Gb downloads

Submitted by: NCBI (GEO)
Study: Candidate biomarkers of EV-microRNA in detecting REM sleep behavior disorder and Parkinson's disease
show Abstracthide Abstract
Our study provides a valuable resource for small RNA profiles in normal, iRBD and PD plasma EVs, and showed that the EV-miRNAs have the potential to serve as biomarker for diagnosing the PD patients and iRBD patients. Overall design: Extracellular vesicle small RNA profiles of human blood plasma by next generation sequencing
Sample: iRBD13
SAMN17768027 • SRS8180309 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina NovaSeq 6000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Frozen plasma samples were thawed in thermostat water bath for 2 min at 37 °C and then centrifuged at 2,500 × g for 15 min at 4 °C to remove precipitated proteins and lipids. ~0.5-1 ml plasma was used as the starting material for each EVs isolation by exoRNeasy Midi kit (Qiagen; Cat#77144) according to the manufacturer's instructions. For EV-RNA extraction, 1 ml Trizol reagent (Invitrogen; Cat#15596026) was added to the column and centrifuged at 3,000 × g for 1 min. Total EV-RNA was isolated by Trizol reagent according to manufacturer's recommendations. A total amount of 0.5-1 ng RNA per sample was used as input material for the RNA sample preparations. The cDNA libraries establishment of small RNAs included adaptor ligation, adapter depletion, first-strand cDNA synthesis, Cas9/sgRNA in vitro cleavage treatment, PCR amplification and gel purification.
Experiment attributes:
GEO Accession: GSM5061375
Links:
Runs: 1 run, 29.1M spots, 4.4G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR1361844629,054,4874.4G1.3Gb2024-01-17

ID:
13139106

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