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SRX019203: GSM455884: MFB_1_sequence
1 ILLUMINA (Illumina Genome Analyzer) run: 6.2M spots, 225M bases, 156.6Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Elucidating the stromal expression pattern in response to tumor-derived Shh
show Abstracthide Abstract
Most tumors of the upper gastrointestinal tract are known to depend on an excessive expression of Shh. It was recently discovered that this Shh does not signal on the tumor cells, but rather the stromal cells that in turn produce an unknown set of reciprocal signals that act as growth- or survival cues for the tumor cells. This sequencing effort aims to identify the reciprocal signals. Overall design: Mouse fibroblasts and Shh-expressing human pancreatic adenocarcinoma cells were either grown alone, or in a non-adherent coculture system. To be able to assess the effect of Shh on fibroblast gene expression (being the reciprocal signal), 5E1 blocking antibody was added to the cells and after 5 days, RNA was isolated. n=1
Sample: MFB_1_sequence
SAMN00011289 • SRS059234 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM455884: MFB_1_sequence
Instrument: Illumina Genome Analyzer
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
forward

Experiment attributes:
GEO Accession: GSM455884
Links:
External link:
Runs: 1 run, 6.2M spots, 225M bases, 156.6Mb
Run# of Spots# of BasesSizePublished
SRR0398866,249,112225M156.6Mb2010-09-24

ID:
20572

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