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SRX136269: Whole Exome Hybrid Selection sequenced on Illumina HiSeq2000
1 ILLUMINA (Illumina HiSeq 2000) run: 55.1M spots, 8.4G bases, 4Gb downloads

Design: Whole Exome Hybrid Selection sequenced on Illumina HiSeq2000
Submitted by: Broad Institute (BI)
Study: Swedish Schizophrenia Population-Based Case-control Exome Sequencing
show Abstracthide Abstract
Current findings of the genetic risk of schizophrenia and bipolar disorder emerging from genome wide association studies (GWAS) support a highly polygenic model displaying the full spectrum of causal alleles that includes the extremes of rare, penetrant alleles as well as common alleles of small effect. Lower frequency polymorphism, rare variants and private mutations have eluded measurement by GWAS studies and thus association with disease. In order to create a comprehensive catalogue of low frequency or rare coding variation in individuals with psychiatric disease and to build a foundation for future genetic studies of schizophrenia and bipolar disorder, we have obtained whole exome DNA sequence from a population-based schizophrenia and bipolar disorder Swedish case-control cohort.
Sample: Non-tumor DNA sample from BLOOD of a human female participant in the dbGaP study "Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing"
SAMN00838549 • SRS303726 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Catch-75307
Instrument: Illumina HiSeq 2000
Strategy: WXS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Spot descriptor:
forward77  reverse

Experiment attributes: (show all 5 attributes...) (hide...)
secondary accessions: SRX136270, SRX136271
4 BI attributes: (show...)(hide...)
BI GSSR sample ID: 107664.0
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:21K89
BI project name: C534
BI work request ID: 25653
Pipeline: show...hide...
NameStepProgramVersion
base caller2011-08-09 00:32:20.0GAPipelineRTA1.12.4.1
The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

  • Study:  phs000473
  • Consent Group: GRU

Runs: 1 run, 55.1M spots, 8.4G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR45516655,084,4338.4G4Gb2012-04-06

ID:
154689

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