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SRX000248: 454 sequencing of coral metagenome fragment library
1 LS454 (454 GS 20) run: 69,216 spots, 8.7M bases, 20.3Mb downloads

Design: none provided
Submitted by: San Diego State University (SDSU)
Study: Microbial Metagenome from Porites compressa NutPorCompHawMic0206
show Abstracthide Abstract
Microbes were collected from whole Porites compressa tissue extracts (originally collected at 21.434025, -157.787822 between February 23-25, 2006) taken from a nutrient stressor experiment that consisted of 5 liters of ambient seawater with additional 10 mM excess of each: nitrate (Ca(NO3)2), nitrite (NaNO2), ammonium (NH4Cl), and phosphate (KH2PO4) that was changed every 24 hours. Metagenome consisted of 36 amplified coral microbial DNA samples that were collected at 1 (n=9), 4 (n=9), 16 (n=9), and 64 (n=9) hours during the experiment. DNA samples were pooled in equal amounts for sequencing at 454 Life Sciences. 454 sequence data is available from the Short Read Archive (SRA): <a href="ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/SRA000457 ">SRA000457</a>. Metagenomic SEED ID: 4440381.3 Nature paper ID: 55 The WGS project can be found using the Project data link.
Sample: Generic sample from coral metagenome
SAMN00000171 • SRS000404 • All experiments • All runs
Library:
Name: NutPorCompHawMic0206
Instrument: 454 GS 20
Strategy: OTHER
Source: OTHER
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 69,216 spots, 8.7M bases, 20.3Mb
Run# of Spots# of BasesSizePublished
SRR00108869,2168.7M20.3Mb2008-04-18

ID:
249

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