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SRX000241: 454 sequencing of coral metagenome fragment library
1 LS454 (454 GS 20) run: 52,895 spots, 6M bases, 14.1Mb downloads

Design: none provided
Submitted by: San Diego State University (SDSU)
Study: Viral community from coral
show Abstracthide Abstract
Viruses were collected from whole Porites compressa tissue extracts (originally collected at 21.434025, -157.787822 between February 23-25, 2006) taken from a reduced pH stressor experiment that consisted of 5 liters of seawater with molecular grade HCl added to a final pH 6.8 that was changed every 24 hours. Metagenome consisted of 36 amplified coral viral DNA samples that were collected at 1 (n=9), 4 (n=9), 16 (n=9), and 64 (n=9) hours during the experiment. DNA samples were pooled in equal amounts for sequencing at 454 Life Sciences. 454 sequence data is available from the Short Read Archive (SRA): <a href="ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/SRA000450 ">SRA000450</a>. Metagenomic SEED ID: 4440371.3 Nature paper ID: 60 The WGS project can be found using the Project data link.
Sample: Generic sample from coral metagenome
SAMN00000164 • SRS000397 • All experiments • All runs
Library:
Name: pHPorCompHawVir0206
Instrument: 454 GS 20
Strategy: OTHER
Source: OTHER
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 52,895 spots, 6M bases, 14.1Mb
Run# of Spots# of BasesSizePublished
SRR00108152,8956M14.1Mb2008-04-18

ID:
242

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