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SRX000238: 454 sequencing of coral metagenome fragment library
1 LS454 (454 GS 20) run: 40,456 spots, 4.5M bases, 10.5Mb downloads

Design: none provided
Submitted by: San Diego State University (SDSU)
Study: Viral community from coral
show Abstracthide Abstract
Viruses were collected from whole Porites compressa tissue extracts (originally collected at 21.434025, -157.787822 between February 23-25, 2006) taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours. Metagenome consisted of 36 amplified coral viral DNA samples that were collected at 1 (n=9), 4 (n=9), 16 (n=9), and 64 (n=9) hours during the experiment. DNA samples were pooled in equal amounts for sequencing at 454 Life Sciences. 454 sequence data is available from the Short Read Archive (SRA): <a href="ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/SRA000447 ">SRA000447</a>. Metagenomic SEED ID: 4440374.3 Nature paper ID: 58 The WGS project can be found using the Project data link.
Sample: Generic sample from coral metagenome
SAMN00000161 • SRS000394 • All experiments • All runs
Library:
Name: ConPorCompHawVir0206
Instrument: 454 GS 20
Strategy: OTHER
Source: OTHER
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 40,456 spots, 4.5M bases, 10.5Mb
Run# of Spots# of BasesSizePublished
SRR00107840,4564.5M10.5Mb2008-04-18

ID:
239

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