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SRX000237: 454 sequencing of coral metagenome fragment library
1 LS454 (454 GS 20) run: 40,770 spots, 4.5M bases, 10.5Mb downloads

Design: none provided
Submitted by: San Diego State University (SDSU)
Study: Viral community from coral
show Abstracthide Abstract
Viruses were collected from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef (21.434025, -157.787822) on February 23, 2006. Corals were collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater. Metagenome consists of 45 amplified coral viral DNA samples combined in equal amounts for sequencing at 454 Life Sciences. 454 sequence data is available from the Short Read Archive (SRA): <a href="ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/SRA000446 ">SRA000446</a>. Metagenomics SEED ID: 4440376.3 Nature paper ID: 57 The WGS project can be found using the Project data link.
Sample: Generic sample from coral metagenome
SAMN00000160 • SRS000393 • All experiments • All runs
Library:
Name: T0PortComHawVir022306
Instrument: 454 GS 20
Strategy: OTHER
Source: OTHER
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 40,770 spots, 4.5M bases, 10.5Mb
Run# of Spots# of BasesSizePublished
SRR00107740,7704.5M10.5Mb2008-04-18

ID:
238

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