Whole genome de novo sequence of Rikettsia colombianensi - SRA

SRX5242767: Whole genome de novo sequence of Rikettsia colombianensi
1 PACBIO_SMRT (PacBio RS II) run: 163,482 spots, 3.2G bases, 10Gb downloads

Design: . colombianensi was initially isolated from A. dissimile ticks using the Shell vial technique. Later for the propagation of R. colombianensi were cultivated in Vero cells. Genome or R. colombianensi was sequenced using a PacBio RSII technology, and raw reads were assembled with PacBio SMRT Analysis pipeline v5.1.0 and the HGAP 4 protocol

Submitted by: Universidad de Cordoba

Study: Draft Genome Sequence of Rickettsia colombianensi, a novel distributed Tick-Associated Bacterium, Colombia

PRJNA493498 • SRP178510 • All experiments • All runs

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Rickettsia colombianensi was described as a Rickettsia strain in 2012, closely related to Rickettsia tamurae. R. colombianensi were detected in Amblyomma dissimile ticks removed from iguanas in the municipality of Monteria (Colombia)

Sample:

SAMN10135122 • SRS4245491 • All experiments • All runs

Organism: Candidatus Rickettsia colombianensi

Library:

Name: X0

Instrument: PacBio RS II

Strategy: WGS

Source: GENOMIC

Selection: unspecified

Layout: SINGLE

Runs: 1 run, 163,482 spots, 3.2G bases, 10Gb

Run	# of Spots	# of Bases	Size	Published
SRR8435191	163,482	3.2G	10Gb	2020-02-02

ID:: 7078833

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