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SRX1032488: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Rissen str. CFSAN031310 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 842,510 spots, 343.7M bases, 213.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr: OSU-ICOPHAI project
PRJNA275961 • SRP057873 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.
Sample:
SAMN03576844 • SRS940118 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Rissen
Library:
Name: Salmonella enterica str. CFSAN031310 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Rissen str. CFSAN031310.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 842,510 spots, 343.7M bases, 213.6Mb
Run# of Spots# of BasesSizePublished
SRR2031995842,510343.7M213.6Mb2015-05-24

ID:
1496045

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