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SRX550161: The whole mitochondrial genome of Paragonimus westermani, the first Indian lung fluke representative for the family Paragonimidae
1 ION_TORRENT (Ion Torrent Proton) run: 1.1M spots, 116.5M bases, 97.6Mb downloads

Submitted by: NEHU
Study: Paragonimus westermani Genome sequencing
show Abstracthide Abstract
Identification of the most prevalent food/waterborne trematode parasites {liver flukes (Fasciola gigantica, Opisthorchis spp.), Intestinal flukes (Fasciolopsis buski, Artyfechinostoma surfratyfex), lungflukes (Paragonimus westermani) and Gastrodiscoides hominis) that are recognized as having zoonotic potential in the NE Region and extraction of their DNA and polyA+ RNA of high quality. ?Sequencing of the DNA and polyA+ RNA preparations using Illumina platform. ?Molecular characterization and partial/complete genome information for these choosen parasites. ?Genetic makeup of the species ?Functional genome and transcriptome analysis ?Identification of characteristic markers for the parasites ?Creation of a webserver for the sequence data
Sample: Pathogen: clinical or host-associated sample from Paragonimus westermani
SAMN02797822 • SRS617921 • All experiments • All runs
Library:
Instrument: Ion Torrent Proton
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Spot descriptor:
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Runs: 1 run, 1.1M spots, 116.5M bases, 97.6Mb
Run# of Spots# of BasesSizePublished
SRR12955991,077,692116.5M97.6Mb2014-05-22

ID:
787119

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