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SRX27281712: PF_KPN18_t2_r3_CRISPRi
1 ILLUMINA (NextSeq 500) run: 45,586 spots, 2.5M bases, 1.1Mb downloads

Design: other
Submitted by: Centro Nacional de Biotecnologia
Study: Dissecting pOXA-48 fitness effects in clinical enterobacteria using plasmid-wide CRISPRi screens
show Abstracthide Abstract
In this study, we introduce plasmid-wide CRISPR interference (CRISPRi) screens as a tool to dissect plasmid-associated fitness effects. We designed and performed CRISPRi screens targeting the globally distributed carbapenem resistance plasmid pOXA-48 in 13 different multidrug resistant clinical enterobacteria. The sequences encompassed under this Bioproject include the raw sequencing reads for the different timepoints (t0, t1, t2 and t3) and replicates (n = 3) for all the strains studied.
Sample:
SAMN45998369 • SRS23725063 • All experiments • All runs
Library:
Name: 327
Instrument: NextSeq 500
Strategy: AMPLICON
Source: GENOMIC
Selection: other
Layout: SINGLE
Runs: 1 run, 45,586 spots, 2.5M bases, 1.1Mb
Run# of Spots# of BasesSizePublished
SRR3192409245,5862.5M1.1Mb2025-01-20

ID:
36812722

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