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SRX17629701: GSM6592147: Duxb1-200_4; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 2000) run: 41.6M spots, 5G bases, 1.6Gb downloads

External Id: GSM6592147_r1
Submitted by: Bioinformatics, Max Planck Institute for Heart and Lung Research
Study: Duxbl-mediated suppression of ZGA drives totipotency to pluripotency transition in mice I
show Abstracthide Abstract
In mammalian embryos, Dux transcription factors (TF) drive a cleavage stage-specific transcriptional burst associated with zygotic genome activation (ZGA) during which hundreds of genes and endogenous retroviral (ERV) elements are transiently expressed. In mice, ZGA begins in late 1-cell (1C) embryos and is shut down within hours at the late 2-cell (2C) to 4-cell (4C) stage. While this transition is accompanied by the loss of totipotency, it is not clear whether shutdown of Dux-induced ZGA is required for this process and how ZGA is terminated. Here, we reveal an essential negative feedback axis by which the Dux family member Duxbl terminates Dux-induced ZGA from the mid 2C stage onward by direct suppression of genomic Dux target loci. Consequently, Duxbl inactivation results in sustained expression of Dux-induced ZGA leading to 4C arrest. Our study reveals the Dux/Duxbl axis that determines the timing of totipotency exit enabling the very first divergence of cell fates. Overall design: Three week-old C57BL6/J female mice were superovulated by intraperitoneal injection of pregnant mare serum gonadotropin (10 IU). 48 h later, human chorion gonadotropin (HCG) (10 IU) was delivered i.p. followed by mating with C57BL6/J males. Next morning, zygotes were surigically isolated from ampulla of the oviducts and brought into culture in EmbryoMax® Advanced KSOM Embryo Medium (Sigma-Aldrich, MR-101-D) at 37 °C and 5 % CO2. Mouse embryos were injected at 1-cell stage (24 h post HCG) with either Duxbl-V5-2A-NLS-mCherry- or NLS-mCherry-encoding mRNAs. Embryos were then cultured until late 2-cell stage (48 h post HCG) and harvested for RNA-seq.
Sample: Duxb1-200_4
SAMN30927421 • SRS15165003 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6592147
Instrument: NextSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Single embryos were separated into tubes. SMART-Seq stranded Kit (Takara Bio) was used following manufacture's protocol without RNA extraction. Sequencing was performed on NextSeq2000 instrument (Illumina) using P3 flowcell with 2x61bp paired end setup.
Runs: 1 run, 41.6M spots, 5G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR2162906841,563,6915G1.6Gb2023-12-07

ID:
24522644

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