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SRX149415: Camellia sinensis floral transcpritome by RNA-seq
1 ILLUMINA (Illumina HiSeq 2000) run: 13.4M spots, 1.2G bases, 717.6Mb downloads

Submitted by: TRICAAS
Study: Camellia sinensis var. sinensis cultivar:Fudingdabaicha Genome sequencing and Transcriptome or Gene expression
show Abstracthide Abstract
It is essential to generate a large transcriptome dataset for marker discovery to facilitate the marker assisted early selection and shorten breeding procedures in tea.By using high-throughput Illumina RNA-seq, a C. sinensis floral transcriptome was analyzed. A total of 26.9 million clean reads averaging 75 bp were assembled de novo into 75,531 unigenes averaging 402 bp. Subsequently, we detected simple sequence repeats (SSRs) in transcriptome and developed thousands of candicated SSR primers for use in future genetic studies by perl scripts.
Sample: Tea plant flowers from Fudingdabaicha
SAMN00998307 • SRS334878 • All experiments • All runs
Library:
Name: floral cDNA library of C. sinensis
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: PAIRED
Spot descriptor:
forward76  reverse

Runs: 1 run, 13.4M spots, 1.2G bases, 717.6Mb
Run# of Spots# of BasesSizePublished
SRR50047513,437,0581.2G717.6Mb2015-07-22

ID:
188797

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