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SRX877980: RNA-seq of Root and Shoot from Schrenkiella parvula
6 ILLUMINA (Illumina HiSeq 2000) runs: 297M spots, 29.7G bases, 20.6Gb downloads

Design: As described in Oh et al. (2014), PMID:24563282. In short: Schrenkiella parvula and Arabidopsis (Arabidopsis thaliana Col-0) plants were grown on root wash mix soil (Plant Care Facility, University of Illinois at -Champaign) in a growth chamber with a 14-h-day/10-h-night cycle, 130 mmol m^-2 s^-1 light intensity, and 22°C to 24°C temperature. Plants were watered every other day, with a supplement of one-twentieth-strength Hoagland solution once every 6 d. For RNA-seq experiments, root and shoot tissues were pooled from 10 4-week-old plants. Plants grown in different batches were sampled for three biological repeats. Total RNAs extracted with the RNeasy Plant kit (Qiagen) were processed using TruSeq RNA Sample Prep Kits version 2 (Illumina) and sequenced by the HiSeq2000 system (Illumina). SpR1, SpR2, and SpR3 are derived from root tissue samples, and SpS1, SpS2, and SpS3 are from shoot (aerial part of the plants) samples.
Submitted by: Louisiana State University
Study: Comparison of basal gene expression strengths between Schrenkiella parvula and Arabidopsis thaliana
show Abstracthide Abstract
Schrenkiella parvula is a wild relative of brassica crops and the model plant Arabidopsis thaliana, and is adapted to multi-ion salt stress. This project compare basal level expression strengths of orthologous genes between the two species, in root and shoot tissues under a non-stress condition, using RNA-seq.
Sample: RNA-seq of root and shoot samples from a halophyte Schrenkiella parvula, for comparison with its relative Arabidopsis thaliana
SAMN03338729 • SRS845941 • All experiments • All runs
Library:
Name: SpBasalRNAseq
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: SINGLE
Spot descriptor:
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Runs: 6 runs, 297M spots, 29.7G bases, 20.6Gb
Run# of Spots# of BasesSizePublished
SRR181078452,909,1115.3G3.7Gb2015-02-18
SRR181078546,672,7234.7G3.2Gb2015-02-18
SRR181078947,457,2684.7G3.3Gb2015-02-18
SRR181078839,434,1413.9G2.7Gb2015-02-18
SRR181078753,706,1065.4G3.7Gb2015-02-18
SRR181078656,855,4965.7G4Gb2015-02-18

ID:
1259568

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