SRA

SRX7988130: Other Sequencing of Severe acute respiratory syndrome coronavirus 2
1 ILLUMINA (Illumina MiSeq) run: 19.7M spots, 11.8G bases, 6.7Gb downloads

Design: RNA was converted to cDNA and Illlumina library using the NEB Ultra II direction RNA prep kit and H/M/R Riboreduction. Library was target enriched using Twist custom Target enrichment for Cov19

Submitted by: University of Maryland Institute for Genome Sciences (UMIGS)

Study: FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

PRJNA231221 • SRP040661 • All experiments • All runs

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Data in this project is grouped by category: <a href="https://data.argosdb.org/actinomycetes/">Actinomycetes</a>, <a href="https://data.argosdb.org/bacillaceae/">Bacillaceae</a>, <a href="https://data.argosdb.org/bacteroidota/">Bacteroidota</a>, <a href="https://data.argosdb.org/escherichia/">Escherichia</a>, <a href="https://data.argosdb.org/eukaryota/">Eukaryota</a>, <a href="https://data.argosdb.org/klebsiella/">Klebsiella</a>, <a href="https://data.argosdb.org/lactobacillales/">Lactobacillales</a>, <a href="https://data.argosdb.org/alphaproteobacteria/">Alphaproteobacteria</a>, <a href="https://data.argosdb.org/betaproteobacteria/">Betaproteobacteria</a>, <a href="https://data.argosdb.org/gammaproteobacteria/">Gammaproteobacteria</a>, <a href="https://data.argosdb.org/enterobacteriaceae/">Enterobacteriaceae</a>, <a href="https://data.argosdb.org/saccharomyces/">Saccharomyces</a>, <a href="https://data.argosdb.org/salmonella/">Salmonella</a>, <a href="https://data.argosdb.org/staphylococcus/">Staphylococcus</a>, <a href="https://data.argosdb.org/viruses/">Viruses</a>, <a href="https://data.argosdb.org/other/">Other</a> Extended Data: <div class="FrameGrid"> <table class="FrameGrid" cellspacing="0" cellpadding="0" style="width: 500px"> <tbody> <tr> <th class="RightIndent2 RB">Resource Name</th> <th>Number of Links</th> </tr> <tr> <td colspan="2" class="DataGrp">Assembly data</td> </tr> <tr> <td>Assemblies (total)</td> <td class="alignRight">1949</td> </tr> <tr> <td>High Quality Assemblies QC'ed by Argos </td> <td class="alignRight">1402</td> </tr> <tr> <td>Additional Assemblies QC'ed by Argos </td> <td class="alignRight">4643</td> </tr> <tr> <td colspan="2" class="DataGrp">NGS Data</td> </tr> <tr> <td>NGS Data (total)</td> <td class="alignRight">3553</td> </tr> <tr> <td>High Quality SRA Experiments (Reads) QC'ed by Argos</td> <td class="alignRight">2945</td> </tr> <tr> <td>Additional SRA Experiments (Reads) QC'ed by Argos</td> <td class="alignRight">608</td> </tr> </tbody> </table></div>

Sample: SARS-CoV-2

SAMN14384141 • SRS6357438 • All experiments • All runs

Organism: Severe acute respiratory syndrome coronavirus 2

Library:

Name: IL100155763

Instrument: Illumina MiSeq

Strategy: Targeted-Capture

Source: VIRAL RNA

Selection: cDNA

Layout: PAIRED

Construction protocol: UMIGS-GRC Illumina Construction Protocol Details

Spot descriptor:

1 forward302 reverse

Runs: 1 run, 19.7M spots, 11.8G bases, 6.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR11409417	19,667,227	11.8G	6.7Gb	2020-03-24

ID:: 10424573

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