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SRX574462: Specific Capture analysis of AML sample TARGET-20-PAPWIU-09A-02D
1 ILLUMINA (Illumina HiSeq 2000) run: 8.1M spots, 1.6G bases, 798.1Mb downloads

Design: Specific Capture analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-02D using Illumina HiSeq 2000
Submitted by: BC Cancer Agency Michael Smith Genome Sciences Centre (BCCAGSC)
Study: TARGET: Acute Myeloid Leukemia (AML)
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There are 200+ fully characterized patient cases with AML (all tumor/normal pairs, 100 with relapse sample as well) that make up the TARGET AML dataset, each with gene expression, tumor and paired normal copy number analyses, methylation and comprehensive next-generation sequencing to include whole genome sequencing, mRNA-seq and miRNA-seq. A subset of these cases will also have whole exome sequencing data available as well. There are additionally a large number of cases with partial molecular characterization making this a large and informative genomic dataset. Additionally, the TARGET AML cohort includes some highly aggressive subtypes including AML "induction failures." Upon diagnosis, AML patients without high-risk genetic markers undergo standard chemotherapy, called the primary induction phase. This phase lasts about 30 days and is designed to eliminate cancer cells. Success of treatment is measured by the percentage of myeloblasts, i.e. immature... (for more see dbGaP study page.)
Sample: Tumor DNA sample from Primary Blood Derived Cancer - Bone Marrow of a human female participant in the dbGaP study "TARGET: Acute Myeloid Leukemia (AML)"
SAMN02386157 • SRS628765 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: A32170
Instrument: Illumina HiSeq 2000
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Construction protocol: N/A
The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

  • Study:  phs000465
  • Consent Group: PCR

Runs: 1 run, 8.1M spots, 1.6G bases, 798.1Mb
Run# of Spots# of BasesSizePublished
SRR13448608,076,3671.6G798.1Mb2014-06-06

ID:
817858

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