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SRX390681: SOLiD3Plus run of Nannochloropsis gaditana B-31 (MP)
1 ABI_SOLID (AB SOLiD 3 Plus System) run: 153.5M spots, 15.3G bases, 12.3Gb downloads

Design: Mate Pair library of Nannochloropsis gaditana whole genomic DNA (i.e. includes DNA from the nucleus and from the organelles). Library size 3-5Kb SOLiD 3 Plus sequencing kit, half plate. Microalgae culturing, DNA extraction library preparation and sequencing were performed in Padova at "CRIBI genomics".
Study: Nannochloropsis gaditana strain:B-31 Genome sequencing
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This is a marine microalga widely used in various industrial applications as food and feed additive. It has been shown to be suitable for production of algal biofuel, due to its ease of growth and high oil content. It has also been shown to be suitable for genetic manipulation. Because of these traits, this microalga is now studied in many laboratories and has become a model organism for investigating algal biofuel. In this project we sequenced the nuclear genome and the genomes of the organelles of Nannochloropsis gaditana strain B-31, which is the original strain isolated by Lubián and conserved at the Instituto Español de Oceanografía (IEO). We assembled the genome almost to chromosome level and we provided an annotation of the genes based on both experimental evidence (RNA-Seq data) and gene prediction.
Sample: General Sample of Nannochloropsis gaditana
SAMN02440168 • SRS514052 • All experiments • All runs
Name: NgaditanaSOLiD4
Instrument: AB SOLiD 3 Plus System
Strategy: WGS
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
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Runs: 1 run, 153.5M spots, 15.3G bases, 12.3Gb
Run# of Spots# of BasesSizePublished


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