Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX340386: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-146521' containing sample 'Escherichia coli HVH 199 (4-5670322)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 3M spots, 610.8M bases, 340.1Mb downloads

UUID: c2a481ce-5eed-4af7-a08a-b3e6c0bff21c

Design: jumping library

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186225 • SRP019158 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 199 (4-5670322)

SAMN01885838 • SRS399705 • All experiments • All runs

Organism: Escherichia coli HVH 199 (4-5670322)

Library:

Name: Solexa-146521

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 294945.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:3YT8V

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30136

research_project: RP-192

root_sample_id: SM-2TD2L

sample_id: SM-3YT8V

work_request: 35511

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-09 06:21:59.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 3M spots, 610.8M bases, 340.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR958411	1,524,379	307.9M	172Mb	2013-08-28
SRR958412	1,499,493	302.9M	168.1Mb	2013-08-28

ID:: 478170

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