small RNA-seq of Arabidopsis thaliana: stems 4cm above a Cuscuta camp... - SRA

SRX3214813: small RNA-seq of Arabidopsis thaliana: stems 4cm above a Cuscuta campestris haustorium
1 ILLUMINA (Illumina HiSeq 2500) run: 10.6M spots, 528.1M bases, 272.3Mb downloads

Design: Total RNA was isolated using Tri-Reagent (Sigma) and used as input to the NEBNext Small RNA Library Prep Set for Illumina. Bar coded Small RNA-seq libraries were made following the manufacturer's instructions, quality-controlled, and pooled for single-end, 50nt sequencing on an Illumina HiSeq2500 instrument in rapid run mode. Libraries were deconvoluted by barcodes.

Submitted by: The Pennsylvania State University

Study: Small RNA-seq from Cuscuta campestris with various host plants

PRJNA408115 • SRP118832 • All experiments • All runs

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Small RNA-seq was performed from haustoria of C. campestris along with attached host stems in order to find haustorium-specific small RNAs from various hosts. The primary motivation of this study is to identify C. campestris small RNAs that function in a trans-species manner to regulate host mRNAs.

Sample: Host stem segments from A. thaliana ~4cm above point of C. campestris haustorial attachment

SAMN07674940 • SRS2539544 • All experiments • All runs

Organism: Arabidopsis thaliana

Library:

Name: cca-ath HS 16

Instrument: Illumina HiSeq 2500

Strategy: miRNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 10.6M spots, 528.1M bases, 272.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR6074032	10,561,479	528.1M	272.3Mb	2017-12-18

ID:: 4523632

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