Sign in to NCBI
Format

Send to:

Choose Destination

SRX3214813: small RNA-seq of Arabidopsis thaliana: stems 4cm above a Cuscuta campestris haustorium
1 ILLUMINA (Illumina HiSeq 2500) run: 10.6M spots, 528.1M bases, 272.3Mb downloads

Design: Total RNA was isolated using Tri-Reagent (Sigma) and used as input to the NEBNext Small RNA Library Prep Set for Illumina. Bar coded Small RNA-seq libraries were made following the manufacturer's instructions, quality-controlled, and pooled for single-end, 50nt sequencing on an Illumina HiSeq2500 instrument in rapid run mode. Libraries were deconvoluted by barcodes.
Submitted by: The Pennsylvania State University
Study: Small RNA-seq from Cuscuta campestris with various host plants
PRJNA408115 • SRP118832 • All experiments • All runs
show Abstracthide Abstract
Small RNA-seq was performed from haustoria of C. campestris along with attached host stems in order to find haustorium-specific small RNAs from various hosts. The primary motivation of this study is to identify C. campestris small RNAs that function in a trans-species manner to regulate host mRNAs.
Sample: Host stem segments from A. thaliana ~4cm above point of C. campestris haustorial attachment
SAMN07674940 • SRS2539544 • All experiments • All runs
Organism: Arabidopsis thaliana
Library:
Name: cca-ath HS 16
Instrument: Illumina HiSeq 2500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 10.6M spots, 528.1M bases, 272.3Mb
Run# of Spots# of BasesSizePublished
SRR607403210,561,479528.1M272.3Mb2017-12-18

ID:
4523632

Supplemental Content

Related information

Recent activity

Your browsing activity is temporarily unavailable.

You are here: NCBI > DNA & RNA > Sequence Read Archive (SRA)
Support Center