Sign in to NCBI
Format

Send to:

Choose Destination

SRX318123: Seedling RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 101.4M spots, 30.4G bases, 18.3Gb downloads

Design: Total RNA was extracted from the germinated seeds of White spruce (PG29) using methodology from Kolosova et al 2004. Quality and quantity was checked using Agilent 2100 BioAnalyzer. The libraries were constructed at the British Columbia Genome Sciences Centre (GSC). The 300bp fractions were made into libraries using RNAseq chemistry; GSC protocol SLX-IPET. Fragments were then indexed (ACTTGA), paired end, and sequenced by Illumina HiSeq-10 with a read length of 150bp. The goal of the experiment is to study the gene richness and composition specific to germinated seed tissue from white spruce.
Submitted by: Michael Smith Labs, University of British Columbia
Study: Picea glauca RNA-Seq
PRJNA210511 • SRP026551 • All experiments • All runs
show Abstracthide Abstract
Whole transcriptome sequencing of various tissues of White Spruce PG29.
Sample: Generic sample from Picea gluaca
SAMN02223063 • SRS455073 • All experiments • All runs
Organism: Picea glauca
Library:
Name: Seedling
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
1  forward151  reverse

Runs: 1 run, 101.4M spots, 30.4G bases, 18.3Gb
Run# of Spots# of BasesSizePublished
SRR926249101,374,19630.4G18.3Gb2013-07-16

ID:
443666

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > Sequence Read Archive (SRA)
Support Center