U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX23813131: SRVP18_Atabeyarchaeia-1
1 ILLUMINA (Illumina NovaSeq X) run: 315,140 spots, 104.3M bases, 37Mb downloads

Design: Library preparation was performed using the NEBNext Ultra II FS DNA Library Prep Kit for Illumina. Final sequencing-ready libraries were visualized using the Agilent 2100 Bioanalyzer before pooling, and the final pooled library was quantified through qPCR using the KAPA Library Quantification Kit for Illumina. Sequencing was performed using Illumina NextSeq 1000/2000 150 paired-end sequencing lanes with 10% PhiX spike-in controls. Post-sequencing bcl files were converted to demultiplexed fastq files per the original sample count with Illuminas bcl2fastq v2.20 software.
Submitted by: Banfield Lab at UC Berkeley (BanfieldLab)
Study: Asgard archaea modulate potential methanogenesis substrates in wetland soil
show Abstracthide Abstract
Abstract: The roles of Asgard archaea in eukaryogenesis and marine biogeochemical cycles are well studied, yet their contributions in soil ecosystems are unknown. Of particular interest are Asgard archaeal contributions to methane cycling in wetland soils. To investigate this, we reconstructed two complete genomes for soil-associated Atabeyarchaeia, a new Asgard lineage, and the first complete genome of Freyarchaeia, and defined their metabolism in situ. Metatranscriptomics highlights high expression of [NiFe]-hydrogenases, pyruvate oxidation and carbon fixation via the Wood-Ljungdahl pathway genes. Also highly expressed are genes encoding enzymes for amino acid metabolism, anaerobic aldehyde oxidation, hydrogen peroxide detoxification and glycerol and carbohydrate breakdown to acetate and formate. Overall, soil-associated Asgard archaea are predicted to be non-methanogenic acetogens, likely impacting reservoirs of substrates for methane production in terrestrial ecosystems.
Sample: SRVP18_Atabeyarchaeia-1
SAMN40176692 • SRS20635743 • All experiments • All runs
Library:
Name: SRVP18_Atabeyarchaeia-1
Instrument: Illumina NovaSeq X
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 315,140 spots, 104.3M bases, 37Mb
Run# of Spots# of BasesSizePublished
SRR28200043315,140104.3M37Mb2024-03-01

ID:
32111270

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...