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SRX1670105: Multi-omics of human faecal sample: metatranscriptomics
1 ILLUMINA (Illumina HiSeq 2500) run: 35M spots, 9.2G bases, 4.6Gb downloads

Design: rRNA was depleted in RNA fractions using Epibio's universal bacteria ribozero kit. Stranded cDNA libraries were constructed using NEBNext Ultra directional RNA Library Prep Kit. Libraries were sequenced to 150 bp (paired-end) on an Illumina HiSeq2500 using TruSeq Rapid SBS Kits v1 (Illumina).
Submitted by: Luxembourg Centre for Systems Biomedicine
Study: Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus
show Abstracthide Abstract
Recent evidence from high-resolution molecular studies suggests links between microbial dysbiosis in the gastrointestinal tract and a number of complex chronic diseases including diabetes mellitus. The present study forms a pilot study for the larger Luxembourg-based Diabetes Multiplex Family Study (MUST). Within the pilot study, we investigate the interplay of the gastrointestinal microbiota, lifestyle and genetic background in an observational study of families with two or more individuals affected by type 1 diabetes mellitus. Faecal samples which have undergone comprehensive biomolecular extractions are currently analysed using a multi-omics approach. Anthropometric data, including demographics, medical history, health status, medication, and dietary habits of all study participants were collected and are integrated with molecular data.
Sample:
SAMN04571736 • SRS1369934 • All experiments • All runs
Library:
Name: M04.6-V3-stool-metaT
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: METATRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 35M spots, 9.2G bases, 4.6Gb
Run# of Spots# of BasesSizePublished
SRR331312234,959,1829.2G4.6Gb2016-08-12

ID:
2395999

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