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SRX1669649: RNAseq from olive xylem: Sample Olive Xylem LC6
1 ILLUMINA (Illumina HiScanSQ) run: 22.9M spots, 1.2G bases, 789.1Mb downloads

Design: Total RNAs were extracted from 1 g of xylem tissues powdered in liquid nitrogen. Libraries of xylem-derived mRNAs were synthesized from three infected cvs Leccino and Ogliarola salentina plants and two healthy plants of the same cultivars. A total amount of 3µg mRNA per sample was used for preparation of libraries that were generated using the TruSeq RNA Sample Preparation Kit v2 (Illumina, USA) following manufacturer’s recommendations. Quality of the synthesized libraries was assessed by the Agilent Bioanalyzer 2100 system (Agilent Technologies, USA). Cluster generation and 50 bp single-end sequencing were performed on a cBot apparatus and HiScanSQTM platform (Illumina, USA).
Submitted by: CNR-Institute for Sustainable Plant Protection
Study: Olea europaea cultivar:Leccino, Ogliarola salentina Transcriptome or Gene expression
show Abstracthide Abstract
Transcriptome profiling of two olive cultivars showing differential phenotypes in response to infection by the CoDiRO strain of Xylella fastidiosa subsp. pauca to investigate the molecular mechanisms underlying the different olive plant responses to the pathogen.
SAMN04579667 • SRS1361213 • All experiments • All runs
Organism: Olea europaea
Name: Olive Xylem LC6
Instrument: Illumina HiScanSQ
Strategy: RNA-Seq
Selection: PolyA
Layout: SINGLE
Spot descriptor:

Runs: 1 run, 22.9M spots, 1.2G bases, 789.1Mb
Run# of Spots# of BasesSizePublished


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