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SRX1381703: Other Sequencing of Klebsiella pneumoniae
1 ILLUMINA (Illumina HiSeq 2000) run: 5.4M spots, 1.1G bases, 756.3Mb downloads

Design: gDNA was sheared to ~380 bp with a Covaris and prepared into an indexed, PE Illumina library
Submitted by: University of Maryland Institute for Genome Sciences (UMIGS)
Study: FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science
show Abstracthide Abstract
Data in this project is grouped by category: <a href="https://data.argosdb.org/actinomycetes/">Actinomycetes</a>, <a href="https://data.argosdb.org/bacillaceae/">Bacillaceae</a>, <a href="https://data.argosdb.org/bacteroidota/">Bacteroidota</a>, <a href="https://data.argosdb.org/escherichia/">Escherichia</a>, <a href="https://data.argosdb.org/eukaryota/">Eukaryota</a>, <a href="https://data.argosdb.org/klebsiella/">Klebsiella</a>, <a href="https://data.argosdb.org/lactobacillales/">Lactobacillales</a>, <a href="https://data.argosdb.org/alphaproteobacteria/">Alphaproteobacteria</a>, <a href="https://data.argosdb.org/betaproteobacteria/">Betaproteobacteria</a>, <a href="https://data.argosdb.org/gammaproteobacteria/">Gammaproteobacteria</a>, <a href="https://data.argosdb.org/enterobacteriaceae/">Enterobacteriaceae</a>, <a href="https://data.argosdb.org/saccharomyces/">Saccharomyces</a>, <a href="https://data.argosdb.org/salmonella/">Salmonella</a>, <a href="https://data.argosdb.org/staphylococcus/">Staphylococcus</a>, <a href="https://data.argosdb.org/viruses/">Viruses</a>, <a href="https://data.argosdb.org/other/">Other</a> <br> <br> <em><i><b>Extended Data:</b></i></em><br><br><div class="FrameGrid"> <table class="FrameGrid" cellspacing="0" cellpadding="0" style="width: 500px"> <tbody> <tr> <th class="RightIndent2 RB">Resource Name</th> <th>Number<br>of Links</th> </tr> <tr> <td colspan="2" class="DataGrp">Assembly data</td> </tr> <tr> <td><span class="smallIndent">Assemblies (total)</span></td> <td class="alignRight">1949</td> </tr> <tr> <td><span class="LeftIndent2"></span><span class="smallIndent">High Quality Assemblies QC'ed by Argos</span> </td> <td class="alignRight">1402</td> </tr> <tr> <td><span class="LeftIndent2"></span><span class="smallIndent">Additional Assemblies QC'ed by Argos</span> </td> <td class="alignRight">4643</td> </tr> <tr> <td colspan="2" class="DataGrp">NGS Data</td> </tr> <tr> <td><span class="smallIndent">NGS Data (total)</span></td> <td class="alignRight">3553</td> </tr> <tr> <td><span class="LeftIndent2"></span><span class="smallIndent">High Quality SRA Experiments (Reads) QC'ed by Argos</span></td> <td class="alignRight">2945</td> </tr> <tr> <td><span class="LeftIndent2"></span><span class="smallIndent">Additional SRA Experiments (Reads) QC'ed by Argos</span></td> <td class="alignRight">608</td> </tr> </tbody> </table></div>
Sample: clinical isolate
SAMN03996262 • SRS1133017 • All experiments • All runs
Library:
Name: IL100043683
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: UMIGS-GRC Illumina Construction Protocol Details
Spot descriptor:
forward102  reverse

Runs: 1 run, 5.4M spots, 1.1G bases, 756.3Mb
Run# of Spots# of BasesSizePublished
SRR28125765,377,3301.1G756.3Mb2015-10-26

ID:
1965425

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