Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Single E6.25 epiblast were dissected as previously described (Tesar et al., 2007). 750 pg of RNA from each sample was amplified using Ovation RNA-seq System V2 (Nugen). Quality of cDNA was confirmed by measuring the expression of G9a, Ezh2, Oct4 and Nanog by qPCR . For every sample 1.5 μg of cDNA was sheared to ~230 bp using S220 Focused-ultrasonicator (Covaris). Fragmented cDNA was then concentrated using Qiagen Reaction Clean Up Kit (MinElute). 500 ng of each sample was used as input for library preparation using Encore Rapid DR Multiplex Library System (Nugen).