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SRX026910: Whole Genome Sequencing of domestic cat
15 ILLUMINA (Illumina Genome Analyzer II) runs: 135M spots, 10.1G bases, 6.4Gb downloads

Design: Illumina sequencing of NHGRI Cat Pooled DNA 2008-11-21 Set 1 fragment RANDOM library
Submitted by: The Genome Center at Washington University School of Medicine in St. Louis (WUGSC)
Study: Felis catus
show Abstracthide Abstract
The DNA for this project came from the following sources:<br><pre> Name Breed Reads <br> Pixel Burmese 331,813<br> Zeelie Persian 298,332<br> Tipper Cornish Rex 272,607<br> Scooter Ragdoll 298,409<br> Speedy Domestic Shorthair 310,364<br> Cocoa Siamese 293,712<br> Felix African wild cat 1,373,060<br> Cinnamon Abyssinian 8,186,934<br></pre> This assembly adds 0.9X coverage to the 1.9X coverage of cinnamon assembly (ANG00000000). The 0.9X coverage comes from six other breeds and one wild cat from paired-end fosmid ABI 3730 reads. All 2.8X coverage was assembled and mapped to the cat genome as described in the 1.9X cat genome publication. The primary goal of this project is to discover SNPs, however, the assembly was a necessary step, and should prove quite useful to the research community.
Sample: Generic sample from Felis catus
SAMN00011885 • SRS059786 • All experiments • All runs
Organism: Felis catus
Library:
Name: 2757154172
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 15 runs, 135M spots, 10.1G bases, 6.4Gb
Run# of Spots# of BasesSizePublished
SRR0660458,625,064646.9M399.7Mb2010-09-18
SRR0660449,020,235676.5M420.9Mb2010-09-18
SRR0660439,070,638680.3M429.6Mb2010-09-18
SRR0660429,249,013693.7M444.4Mb2010-09-18
SRR0660419,613,864721M452.3Mb2010-09-18
SRR0660349,471,452710.4M446.7Mb2010-09-18
SRR0660338,982,370673.7M408.6Mb2010-09-18
SRR0658548,135,452610.2M412.1Mb2010-09-17
SRR0658538,312,833623.5M417Mb2010-09-17
SRR0658529,328,645699.6M456.5Mb2010-09-17
SRR0658507,973,199598M366.7Mb2010-09-17
SRR0658499,472,314710.4M458.6Mb2010-09-17
SRR0658488,447,995633.6M421.2Mb2010-09-17
SRR06584710,823,788811.8M563.2Mb2010-09-17
SRR0658468,458,631634.4M436.2Mb2010-09-17

ID:
32771

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