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SRX019524: Whole Genome Sequencing of domestic cat
7 ILLUMINA (Illumina Genome Analyzer II) runs: 87.6M spots, 13.1G bases, 8.5Gb downloads

Design: Illumina sequencing of NHGRI Cat FCAG-081121_gDNA_EM1_female_tube1 paired end RANDOM library
Submitted by: The Genome Center at Washington University School of Medicine in St. Louis (WUGSC)
Study: Felis catus
show Abstracthide Abstract
The DNA for this project came from the following sources:<br><pre> Name Breed Reads <br> Pixel Burmese 331,813<br> Zeelie Persian 298,332<br> Tipper Cornish Rex 272,607<br> Scooter Ragdoll 298,409<br> Speedy Domestic Shorthair 310,364<br> Cocoa Siamese 293,712<br> Felix African wild cat 1,373,060<br> Cinnamon Abyssinian 8,186,934<br></pre> This assembly adds 0.9X coverage to the 1.9X coverage of cinnamon assembly (ANG00000000). The 0.9X coverage comes from six other breeds and one wild cat from paired-end fosmid ABI 3730 reads. All 2.8X coverage was assembled and mapped to the cat genome as described in the 1.9X cat genome publication. The primary goal of this project is to discover SNPs, however, the assembly was a necessary step, and should prove quite useful to the research community.
Sample: Felis catus
SAMN00011774 • SRS059676 • All experiments • All runs
Organism: Felis catus
Library:
Name: 2769824791
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward76  reverse

Runs: 7 runs, 87.6M spots, 13.1G bases, 8.5Gb
Run# of Spots# of BasesSizePublished
SRR04040311,721,0961.8G1.2Gb2010-04-29
SRR04040413,632,8582G1.3Gb2010-04-29
SRR04040511,937,8091.8G1.1Gb2010-04-29
SRR04040612,776,4171.9G1.2Gb2010-04-29
SRR04040711,624,1411.7G1.1Gb2010-04-29
SRR04042511,690,7421.8G1.2Gb2010-04-29
SRR04042614,256,9632.1G1.3Gb2010-04-29

ID:
20943

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