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SRX191156: GSM1015157: Chicken liver; Gallus gallus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 58.3M spots, 8.4G bases, 4.9Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: The evolutionary landscape of alternative splicing in vertebrate species
show Abstracthide Abstract
How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the transcriptomes of multiple organs from vertebrate species spanning ~350 million years of evolution, we observe significant differences in alternative splicing complexity between the main vertebrate lineages, with the highest complexity in the primate lineage. Moreover, within as little as six million years, the splicing profiles of physiologically-equivalent organs have diverged to the extent that they are more strongly related to the identity of a species than they are to organ type. Most vertebrate species-specific splicing patterns are governed by the highly variable use of a largely conserved cis-regulatory code. However, a smaller number of pronounced species-dependent splicing changes are predicted to remodel interactions involving factors acting at multiple steps in gene regulation. These events are expected to further contribute to the dramatic diversification of alternative splicing as well as to other gene regulatory changes that contribute to phenotypic differences among vertebrate species. Overall design: mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq
Sample: Chicken liver
SAMN01758118 • SRS366865 • All experiments • All runs
Organism: Gallus gallus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Experiment attributes:
GEO Accession: GSM1015157
Links:
External link:
Runs: 1 run, 58.3M spots, 8.4G bases, 4.9Gb
Run# of Spots# of BasesSizePublished
SRR57955258,286,8628.4G4.9Gb2012-12-24

ID:
251894

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