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SRX2583603: Foz1
1 ILLUMINA (Illumina HiSeq 2500) run: 65.7M spots, 13.3G bases, 8.4Gb downloads

Design: RNAseq of Brachypodium distachyon leaf accession Foz1
Submitted by: The Sainsbury Laboratory
Study: Genome and transcriptome assembly of three Brachypodium distachyon accessions from Spain
show Abstracthide Abstract
The Brachypodium distachyon accessions Foz1, Jer1, and Luc1 exhibit substantial variation for nonhost resistance to wheat stripe rust (Puccinia striiformis f. sp. tritici). To understand the genetic variation present between these accessions, we performed de novo assembly of the genome from publically available data using CLC Assembly Cell. In addition, fourth and fifth leaf from each accession was sampled, RNA extracted, and deep sequenced using Illumina paired end sequencing. We generated de novo transcriptome assemblies using Trinity.
Sample: Leaf tissue from Brachypodium distachyon accession Foz1
SAMN06434174 • SRS1997434 • All experiments • All runs
Name: LIB19942
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 65.7M spots, 13.3G bases, 8.4Gb
Run# of Spots# of BasesSizePublished


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