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SRX1034172: GSM1692575: At_mock_R1; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 9.2M spots, 883.6M bases, 660.5Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata
show Abstracthide Abstract
Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. To identify heat stress induced genes, we performed RNA-sequencing of rosette leaves from mock-treated, heat-stressed and heat-stressed-recoved plants of both species. Overall design: Analysis of genetic element transcriptional changes in response to 6 hours of 37°C heat stress and 48 hours of recovery in Arabidopsis thaliana Col-0 and Arabidopsis lyrata MN47.
Sample: At_mock_R1
SAMN03702811 • SRS941693 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Leaves were dissected with a razor blade, flash frozen in liquid nitrogen and total RNA was extracted using the RNeasy Mini Kit (Qiagen) with additional on column DNase I (Roche) digest RNA libraries were prepared using RNA TruSeq kit (Illumina) using standard protocol
Experiment attributes:
GEO Accession: GSM1692575
Links:
External link:
Runs: 1 run, 9.2M spots, 883.6M bases, 660.5Mb
Run# of Spots# of BasesSizePublished
SRR20339489,204,014883.6M660.5Mb2015-08-02

ID:
1497731

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