Name: GSM5972513
Instrument: NextSeq 500
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: The cells were lysed using a Freezer-Mill (SPEX SamplePrep) with the settings: 2 cycles of 2 min precooling, 2 min at 5 CPS and 1 min intermittent cooling. 10 A260 units of cleared lysates were digested with 250 U Ambion RNase I for 1 h at 22 °C and 1400 rpm agitation. The reaction was stopped by adding 15 μl SuperaseIn. Lysates were thawed in lysis buffer (20 mM Tris-HCl pH 7.4, 5 mM MgCl2, 100 mM NaCl, 1 % Triton, 2 mM DTT, 100 μg/ml CHX and clarified by two rounds of centrifugation (3 min; 4 °C; 3000 g and 5 min, 4 °C and 10000 g). Ribosome-protected footprints were purified from monosome fractions by size selection and gel extraction. Following 3' dephosphorylation these fragments were subjected to adaptor ligation, RT, circularization and PCR amplification.