GSM1576570: AtDZ2; Arabidopsis thaliana; RNA-Seq - SRA

SRX828702: GSM1576570: AtDZ2; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 28.7M spots, 1.5G bases, 956.8Mb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Conserved Molecular Program for Root Development in Diverse Plants

PRJNA271595 • SRP051696 • All experiments • All runs

show Abstracthide Abstract

We define genome-wide temporal expression patterns of root development genes in seven vascular plants, enabling a detailed comparative analysis of the molecular development of a single organ across diverse species. Overall design: Measuring mRNA expression of the root development zones in 7 vascular plants. Each measurement includes 3 biological replicates.

Sample: AtDZ2

SAMN03275442 • SRS807724 • All experiments • All runs

Organism: Arabidopsis thaliana

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: The growing tips of the seedling primary roots were dissected along the longitudinal axis into 3 development zones. RNA was extracted by Qiagen RNeasy Plant Mini Kit. RNA libraries were constructed by Illumina TrueSeq kit according to manufacturer procedures.

Experiment attributes:

GEO Accession: GSM1576570

Links:

External link: GEO Sample GSM1576570

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 28.7M spots, 1.5G bases, 956.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR1740408	28,679,227	1.5G	956.8Mb	2015-08-24

ID:: 1178477

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