U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX12006854: MiSeq data from metagenome of Halichondria panicea: pinacoderm and choanosome
1 ILLUMINA (Illumina MiSeq) run: 87.5M spots, 26.4G bases, 10.7Gb downloads

Design: Libraries of DNA extracted from Halichondria panicea and its microbiome were prepared using a MiSeq Reagent kit v3 with 600 cycles (Illumina, USA) and sequenced across two lanes (3 and 4) to generate paired end reads (2x300 bp) on an Illumina MiSeq.
Submitted by: University of Southern Denmark
Study: Halichondria panicea draft genome and microbiome metagenome assembled genomes (MAGs)
show Abstracthide Abstract
These data were generated in order to create a reference metagenome for the emerging model sponge species, Halichondria panicea and its microbiome. These data include raw sequences from three separate sequencing runs of the metagenome of a single individual of Halichondria panicea - one Illumina MiSeq (2x300 bp, paired-end, across two lanes) run and three Oxford Nanopore Technologies (ONT) long-read sequencing runs, generating 53.8 and 7.42 Gbp respectively. Draft metagenome assemblies were created using the Illumina, ONT and both approaches combined. Metagenome assembled genomes (MAGs) for the sponge and two microbial symbionts were created from bining the Illumina-only metagenome assembly.
Sample:
SAMN20669589 • SRS10013165 • All experiments • All runs
Library:
Name: H_panicea_L4_R1
Instrument: Illumina MiSeq
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 87.5M spots, 26.4G bases, 10.7Gb
Run# of Spots# of BasesSizePublished
SRR1571113787,500,32126.4G10.7Gb2021-10-12

ID:
15925744

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...