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SRX11970129: RNAseq of sic-3 exposed to 28 degrees Celsius, replicate 2
1 ILLUMINA (Illumina HiSeq 4000) run: 31.7M spots, 9.5G bases, 3.8Gb downloads

Design: Poly(A) RNA isolated from total RNA with Dynabeads Oligo(dT) kit (Invitrogen). Library prepared with ScriptSeq v2 RNA-Seq library preparation kit (Epicentre). Libraries indexed with ScriptSeq Index PCR primers (Epicenter). Illumina HiSeq4000 paired-end sequencing at 150bp.
Submitted by: USDA-ARS
Study: Impact of sickle mutant and temperature on structure of transcripts and RNAs from Arabidopsis thaliana.
show Abstracthide Abstract
RNAseq profiling of Arabidopsis thaliana Columbia-0 wild type and sickle-3 mutant seedlings grown under 28 and 16 degrees Celsius. The goal was to identify how the RNA pool is altered by the interaction between temperature and the sickle mutant.
Sample: RNAseq of sic-3 exposed to 28 degrees Celsius, replicate 2
SAMN21032906 • SRS9979343 • All experiments • All runs
Name: sic-3_28_rep2
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 31.7M spots, 9.5G bases, 3.8Gb
Run# of Spots# of BasesSizePublished


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