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SRX11970132: RNAseq of sic-3 exposed to 16 degrees Celsius, replicate 1
1 ILLUMINA (Illumina HiSeq 4000) run: 38.2M spots, 11.5G bases, 4.7Gb downloads

Design: Poly(A) RNA isolated from total RNA with Dynabeads Oligo(dT) kit (Invitrogen). Library prepared with ScriptSeq v2 RNA-Seq library preparation kit (Epicentre). Libraries indexed with ScriptSeq Index PCR primers (Epicenter). Illumina HiSeq4000 paired-end sequencing at 150bp.
Submitted by: USDA-ARS
Study: Impact of sickle mutant and temperature on structure of transcripts and RNAs from Arabidopsis thaliana.
show Abstracthide Abstract
RNAseq profiling of Arabidopsis thaliana Columbia-0 wild type and sickle-3 mutant seedlings grown under 28 and 16 degrees Celsius. The goal was to identify how the RNA pool is altered by the interaction between temperature and the sickle mutant.
Sample: RNAseq of sic-3 exposed to 16 degrees Celsius, replicate 1
SAMN21032899 • SRS9979347 • All experiments • All runs
Name: sic-3_16_rep1
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 38.2M spots, 11.5G bases, 4.7Gb
Run# of Spots# of BasesSizePublished


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