WGS: Enterococcus faecalis UMB1309 - SRA

SRX8019072: WGS: Enterococcus faecalis UMB1309
1 ILLUMINA (NextSeq 550) run: 2.1M spots, 534.6M bases, 215.7Mb downloads

Design: DNA was extracted using the Qiagen DNeasy Blood & Tissue Kit and quantified using the Qubit Fluorometer. DNA was sent to the Microbial Genomic Sequencing Center (MiGS) at the University of Pittsburgh for sequencing.

Submitted by: Loyola University Chicago

Study: Female Urinary Microbiota Genome Sequencing

PRJNA316969 • SRP072679 • All experiments • All runs

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Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed 'no growth' by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.

Sample:

SAMN14478485 • SRS6392409 • All experiments • All runs

Organism: Enterococcus faecalis

Library:

Name: Ef_UMB1309

Instrument: NextSeq 550

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 2.1M spots, 534.6M bases, 215.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR11441014	2,145,494	534.6M	215.7Mb	2020-03-28

ID:: 10455743

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