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Items: 15

  • Showing SRA Experiments for SRP111728

SRX3142621: RNA-Seq of Quercus suber: phellem tissue
1 ILLUMINA (Illumina HiSeq 4000) run: 360.1M spots, 72G bases, 26.1Gb downloads

SRX3142621: RNA-Seq of Quercus suber: xylem tissue
1 ILLUMINA (Illumina HiSeq 4000) run: 361.3M spots, 72.3G bases, 25.6Gb downloads

SRX3142621: RNA-Seq of Quercus suber: leaf tissue
1 ILLUMINA (Illumina HiSeq 4000) run: 300M spots, 60G bases, 21.3Gb downloads

SRX3142621: RNA-Seq of Quercus suber: innerbark tissue
1 ILLUMINA (Illumina HiSeq 4000) run: 311.4M spots, 62.3G bases, 22.1Gb downloads

SRX3142621: RNA-Seq of Quercus suber: pollen tissue
1 ILLUMINA (Illumina HiSeq 4000) run: 197.7M spots, 39.5G bases, 27.5Gb downloads

SRX3142621: WGS of Q. suber: genome survey using 500bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 106.4M spots, 21.3G bases, 13.7Gb downloads

SRX3142621: WGS of Q. suber: genome survey using 170bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 176.2M spots, 35.2G bases, 21.3Gb downloads

SRX3142621: WGS of Q. suber:complex genome using 500bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 355.6M spots, 66.4G bases, 39.9Gb downloads

SRX3142621: WGS of Q. suber:complex genome using 170bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 315.4M spots, 63.1G bases, 41.8Gb downloads

SRX3142621: WGS of Q. suber:complex genome using 300bp inserts
5 ILLUMINA (HiSeq X Ten) runs: 2.8G spots, 847.3G bases, 309.2Gb downloads

SRX3142621: WGS of Q. suber:complex genome using 800bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 311.4M spots, 62.3G bases, 44.8Gb downloads

SRX3142621: WGS of Q. suber:mate pair using 5000bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 251M spots, 24.6G bases, 18Gb downloads

SRX3142621: WGS of Q. suber:mate pair using 2000bp inserts
1 ILLUMINA (Illumina HiSeq 2000) run: 709.6M spots, 69.5G bases, 50.7Gb downloads

SRX3142621: WGS of Q. suber:mate pair using 20Kbp inserts
1 ILLUMINA (Illumina HiSeq 4000) run: 129.1M spots, 12.7G bases, 5.4Gb downloads

SRX3142621: WGS of Q. suber:mate pair using 10Kbp inserts
1 ILLUMINA (Illumina HiSeq 4000) run: 101.3M spots, 9.9G bases, 4.4Gb downloads

1.

Design: RNA-seq libraries preparation and sequencing was performed by Beijing Genomics Institute BGI (Hong-Kong, China). cDNA synthesis and paired-end library were prepared following the protocol of Illumina® TruSeq RNA Library Preparation kit for non-normalized libraries. This sample was used in the preparation of two independent RNA-seq libraries, each sequenced in two independent lanes using the Illumina HiSeqTM 4000 platform with a read length of 100nt, as part of a pool containing a total of four libraries, which also includes library IDs HL8_RNASeq_Innerbark, HL8_RNASeq_Leaf and HL8_RNASeq_Xylem. Raw reads were filtered by the barcode sequence corresponding to this sample, then adaptors were removed, as well as empty reads and low quality sequences.
Submitted by: CEBAL
Study: Quercus suber isolate:HL8 Raw sequence reads
show Abstracthide Abstract
Project that aimed to unveil and release the genome of the cork oak tree
Sample: Quercus suber material from HL8 tree
SAMN07312269 • SRS2349719 • All experiments • All runs
Organism: Quercus suber
Library:
Name: HL8_RNASeq_Phellem
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 360.1M spots, 72G bases, 26.1Gb
Run# of Spots# of BasesSizePublished
SRR5986737360,128,70472G26.1Gb2018-03-15

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