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ERX069505: Whole Genome Sequencing of human CEU NA12878
4 ILLUMINA (Illumina HiSeq 2000) runs: 854.1M spots, 172.5G bases, 101Gb downloads

Design: Paired-end sequencing (2x100 base) of human library with ~300 bp inserts
Submitted by: Illumina Cambridge Ltd. (ILLUMINA)
Study: Whole human genome sequencing of an CEPH/UTAH female individual (HapMap: NA12878) using the Illumina HiSeq 2000 and paired 100 base reads
show Abstracthide Abstract
We have generated paired-end sequence data covering the genome of an CEPH female individual to a sequence depth of more than 30-fold using the Illumina HiSeq 2000. This individual is a member of the population samples described in the PhaseI and PhaseII HapMap Projects and is from the CEPH/UTAH pedigree 1463 (abbreviation: CEPH). The DNA identifier for this individual is NA12878. We obtained the DNA sample NA12878 from The Coriell Institute for Medical Research. Starting with 1ug of DNA, and following random fragmentation, we generated a PCR-Free sequencing library with a median insert size of ~300 bp. 100 base sequence reads were generated from both ends of these templates using the Illumina HiSeq 2000. We carried out purity-filtering (PF) to remove mixed reads, where two or more different template molecules are close enough on the surface of the flow-cell to form a mixed or overlapping cluster. No other filtering of the data has been carried out prior to submission. We have also submitted equivalent sequence data for the father and one of the son's of family 1463 (NA12877 and NA12882).
Sample: Coriell GM12878
SAMN00801888 • SRS000090 • All experiments • All runs
Organism: Homo sapiens
Name: CT8595
Instrument: Illumina HiSeq 2000
Strategy: WGS
Selection: RANDOM
Layout: PAIRED
Construction protocol: Standard Illumina paired-end library construction protocol. Genomic DNA was randomly fragmented and a ~300bp fragment was obtained by gel electrophoresis after ligation of adaptors.
Spot descriptor:
forward102  reverse

Runs: 4 runs, 854.1M spots, 172.5G bases, 101Gb
Run# of Spots# of BasesSizePublished


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