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DRX480013: Sequel II sequencing of SAMD00056911
2 PACBIO_SMRT (Sequel II) runs: 12M spots, 254.2G bases, 59.7Gb downloads

Submitted by: TITECH
Study: Whole genome sequences of the Amami spiny rat, Tokudaia osimensis
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The Amami spiny rat, Tokudaia osimensis, has very unique sex chromosomes and sex-determining mechanism. The sex chromosome constitution of this species is XO/XO, which is caused by the absence of the Y chromosome. This species also lacks the SRY gene which is sex-determining gene in eutherian mammals. Therefore, it is hypothesized that T. osimensis acquires a new sex-determining gene superseded SRY. Furthermore, T. osimensis is an endangered species and has been protected by the Japanese government as such since 1972. Therefore, we performed whole genome sequencing and de novo assembly analysis for two aims: use the information for study of sex-determining mechanism and evolution of the Y chromosome, reserve the information as an important resources.
Sample: Whole genome sequences of TOS
SAMD00056911 • DRS261121 • All experiments • All runs
Name: PacBio
Instrument: Sequel II
Strategy: WGS
Selection: RANDOM
Layout: SINGLE
Construction protocol:
Runs: 2 runs, 12M spots, 254.2G bases, 59.7Gb
Run# of Spots# of BasesSizePublished


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