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DRX479884: Illumina NovaSeq 6000 paired end sequencing of SAMD00634148
1 ILLUMINA (Illumina NovaSeq 6000) run: 546.6M spots, 164G bases, 57.4Gb downloads

Submitted by: TITECH
Study: Whole genome sequences of the Okinawa island spiny rat, Tokudaia muenninki
show Abstracthide Abstract
The Okinawa island spiny rat, Tokudaia muenninki, has highly unique sex chromosomes. The diploid chromosome number of T. muenninki is 44 with XX/XY sex chromosome constitution, and both sex chromosomes are uncommonly large. The euchromatic regions of the X and Y chromosomes occupy 8% and 4% of the haploid genome, indicating that autosomal fusions have occurred. T. muenninki has multiple SRY copies on the large Y chromosome. Therefore, we conducted whole genome sequencing and de novo assembly analysis for two aims: first, to utilize the information for the research of the evolution of the sex chromosomes, and second, to reserve the information as an important resource.
Sample: Whole genome sequences of TMU
SAMD00634148 • DRS325000 • All experiments • All runs
Name: Hi-C
Instrument: Illumina NovaSeq 6000
Strategy: Hi-C
Selection: RANDOM
Layout: PAIRED
Construction protocol:
Runs: 1 run, 546.6M spots, 164G bases, 57.4Gb
Run# of Spots# of BasesSizePublished


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