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SRX832471: GSM1579234: Th2 WT IP with NLRP3 antibody; Mus musculus; ChIP-Seq
1 ILLUMINA (Illumina MiSeq) run: 2.5M spots, 374.8M bases, 138.9Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Chromatin interaction analysis of transcription factors and NLRP3 in CD4+ T cells differentiated from wild-type and NLRP3KO mice
show Abstracthide Abstract
We report that the NLRP3 protein is able to interact with chromatin during Th2 differentiation Overall design: Examination of the interaction of NLRP3 and transcription factors during early stages of Th2 CD4+ T cell differentiation
Sample: Th2 WT IP with NLRP3 antibody
SAMN03277079 • SRS810756 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Crosslinking, extraction and shearing of chromatin was performed by using the Truchip chromatin shearing reagent kit from 300,000 Th2 cells by following manufacturer protocol. Then, sheared chromatin was immunoprecipitated with different antibodies by using the Active Motif's ChIP IT Kit by following manufacturer's instructions Libraries were prepared according to NEB's instructions accompanying the NEBNext Ultra DNA Library Prep Kit for Illumina. After library validation on a fragment analyzer, the purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the MiSeq device following the manufacturer's protocols.
Experiment attributes:
GEO Accession: GSM1579234
Links:
External link:
Runs: 1 run, 2.5M spots, 374.8M bases, 138.9Mb
Run# of Spots# of BasesSizePublished
SRR17445462,522,836374.8M138.9Mb2015-05-12

ID:
1182246

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