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SRX7050993: GSM4138081: ChIPRxseq_phosphoPNUTS_input_spike.normalized.bam; Homo sapiens; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 13.2M spots, 980.6M bases, 171.6Mb downloads

Submitted by: NCBI (GEO)
Study: Local inhibition of protein phosphatase 1 by NUAK1 promotes spliceosome assembly and reveals a MYC-sensitive feedback control of transcriptional elongation
show Abstracthide Abstract
Deregulated expression of MYC induces a dependence on the NUAK1 kinase, but the molecular mechanisms underlying this dependence have not been fully clarified. Here we show that NUAK1 is a predominantly nuclear protein that associates with a network of nuclear protein phosphatase 1 (PP1) interactors and that PNUTS, a nuclear regulatory subunit of PP1, is phosphorylated by NUAK1. Both NUAK1 and PNUTS associate with the splicing machinery. Inhibition of NUAK1 abolishes chromatin association of PNUTS, reduces spliceosome activity and suppresses nascent RNA synthesis. Activation of MYC does not bypass the requirement for NUAK1 for spliceosome activity, but significantly attenuates transcription inhibition. Consequently, NUAK1 inhibition in MYC-transformed cells induces global accumulation of RNAPII both at the pause-site and at the first exon/intron boundary, but does not increase mRNA synthesis. We suggest that NUAK1 inhibition in the presence of deregulated MYC traps non-productive RNAPII due to the absence of correctly assembled spliceosomes. Overall design: 4sU-, mRNA- and RNAPII- or PNUTS-ChIP-seq after inhibition of NUAK1 in U2OS cells.
Sample: ChIPRxseq_phosphoPNUTS_input_spike.normalized.bam
SAMN13107860 • SRS5567853 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: ChIP-Rxseq sample preparation was performed as previously described (Herold et al., 2019). Samples were spiked with 10% NIH3T3 cells. Libraries were prepared as previously described (Herold et al., 2019).
Experiment attributes:
GEO Accession: GSM4138081
Links:
Runs: 1 run, 13.2M spots, 980.6M bases, 171.6Mb
Run# of Spots# of BasesSizePublished
SRR1034092713,245,407980.6M171.6Mb2020-02-04

ID:
9270025

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