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SRX6800706: GSM4059677: JUN-HA, replicate 1 [jun-1-inp-ACAGTG_S4]; Homo sapiens; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 44.8M spots, 6.8G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: CAR T cells Overexpressing cJun Are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity
show Abstracthide Abstract
CAR T cells mediate antitumor effects in a small subset of cancer patients, but dysfunction due to T cell exhaustion is an important barrier to progress. To investigate the biology of exhaustion in human T cells expressing CAR receptors, we used a model system employing a tonically signaling CAR, which induces hallmarks of exhaustion described in other settings. Exhaustion was associated with a profound defect in IL-2 production alongside increased chromatin accessibility of AP-1 transcription factor motifs, and overexpression of numerous bZIP and IRF transcription factors that have been implicated in inhibitory activity. Here we demonstrate that engineering CAR T cells to overexpress c-Jun, a canonical AP-1 factor, enhanced expansion potential, increased functional capacity, diminished terminal differentiation and improved antitumor potency in numerous in vivo tumor models. We conclude that a functional deficiency in c-Jun mediates dysfunction in exhausted human T cells and that engineering CAR T cells to overexpress c-Jun renders them exhaustion-resistant, thereby addressing a major barrier to progress for this emerging class of therapeutics. Overall design: ChIP-seq or input controls from CAR-T cells overexpressing either JUN-HA or HA tag alone from two distinct viral transductions.
Sample: JUN-HA, replicate 1 [jun-1-inp-ACAGTG_S4]
SAMN12691774 • SRS5344176 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Cells are fixed with 1% FA. Following ChIP and washes, DNA is purified using Ampure XP End-repair and A-tailing performed with NEB Ultra II Kit per protocol. Adaptor ligation and indexing with NEBNext Multiplex Oligos
Experiment attributes:
GEO Accession: GSM4059677
Links:
Runs: 1 run, 44.8M spots, 6.8G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR1006711444,848,3786.8G2.3Gb2019-10-01

ID:
8958634

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